This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0001XG3.1

Display Name: USA/LOC_0001XG3.1/2005-08-03
F. Bernardin, S. Stramer, S. Caglioti, M. P. Busch & E. Delwart

Sample details

Collection date
2005-08-03
Collection date (lower bound)
2005-08-03
Collection date (upper bound)
2005-08-03
Earliest release date
2010-09-21
Collection country
USA
Collection subdivision level 1
zip code 68803
Isolate name
104E-19668NE05HA

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-04 22:10insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Blood Systems Research Institute and University of California, San Francisco

INSDC

NCBI release date
2010-09-21
NCBI update date
2016-07-25
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
1418
Total SNPs
6
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
12.86%
Total stop codons
0

Submission details

Submission ID
GQ502423.1
Submitting group
Date submitted
2026-02-04 22:10:23 UTC
Date released
2026-02-04 22:13:29 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T1442C
  • C1465T
  • A1539G
  • T1608C
  • C1620T
  • A2253G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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